6.1.1. Scripts to run combine and post processing

Build the POST processing routines

Copy the buildit script from the repo, as it was corrected to use CMAQv533 rather than CMAQv532

cd /shared/build/openmpi_gcc/CMAQ_v533/POST/combine/scripts
cp /shared/pcluster-cmaq/run_scripts/bldit_combine.csh .

Run the bldit script for combine.

./bldit_combine.csh gcc |& tee ./bldit_combine.gcc.log

Copy the bldit script from the repo, as it was corrected to use CMAQv533 rather than CMAQv532

cd /shared/build/openmpi_gcc/CMAQ_v533/POST/calc_tmetric/scripts
cp /shared/pcluster-cmaq/run_scripts/bldit_calc_tmetric.csh .

Run the bldit script for calc_tmetric

./bldit_calc_tmetric.csh gcc |& tee ./bldit_calc_tmetric.gcc.log

Copy the bldit script from the repo

cd /shared/build/openmpi_gcc/CMAQ_v533/POST/hr2day/scripts
cp /shared/pcluster-cmaq/run_scripts/bldit_hr2day.csh

Run the bldit script

./bldit_hr2day.csh gcc |& tee ./bldit_hr2day.gcc.log

Copy the bldit script from the repo and run

cd /shared/build/openmpi_gcc/CMAQ_v533/POST/bldoverlay/scripts
cp /shared/pcluster-cmaq/run_scripts/bldit_bldoverlay.csh .
./bldit_bldoverlay.csh gcc |& tee ./bldit_bldoverlay.gcc.log

Scripts to post-process CMAQ output

Instructions on how to Post-process CMAQ using the utilities under the POST directory

Note

The post-processing analysis is run on the head node.

Verify that the compute nodes are no longer running if you have completed all of the benchmark runs

squeue

You should see that no jobs are running.

Show compute nodes

scontrol show nodes

Edit, Build and Run the POST processing routines

setenv DIR /shared/build/openmpi_gcc/CMAQ_v533/

cd $DIR/POST/combine/scripts
sed -i 's/v532/v533/g' bldit_combine.csh
./bldit_combine.csh gcc |& tee ./bldit_combine.gcc.log

cp run_combine.csh run_combine_conus.csh
sed -i 's/v532/v533/g' run_combine_conus.csh
sed -i 's/Bench_2016_12SE1/2016_CONUS_16x18pe/g' run_combine_conus.csh
sed -i 's/intel/gcc/g' run_combine_conus.csh
sed -i 's/2016-07-01/2015-12-22/g' run_combine_conus.csh
sed -i 's/2016-07-14/2015-12-23/g' run_combine_conus.csh
setenv CMAQ_DATA /fsx/data
./run_combine_conus.csh

cd $DIR/POST/calc_tmetric/scripts
sed -i 's/v532/v533/g' bldit_calc_tmetric.csh
./bldit_calc_tmetric.csh gcc |& tee ./bldit_calc_tmetric.gcc.log

cp run_calc_tmetric.csh run_calc_tmetric_conus.csh
sed -i 's/v532/v533/g' run_calc_tmetric_conus.csh
sed -i 's/Bench_2016_12SE1/2016_CONUS_16x18pe/g' run_calc_tmetric_conus.csh
sed -i 's/intel/gcc/g' run_calc_tmetric_conus.csh
sed -i 's/201607/201512/g' run_calc_tmetric_conus.csh
setenv CMAQ_DATA /fsx/data
./run_calc_tmetric_conus.csh

cd $DIR/POST/hr2day/scripts
sed -i 's/v532/v533/g' bldit_hr2day.csh
./bldit_hr2day.csh gcc |& tee ./bldit_hr2day.gcc.log

cp run_hr2day.csh run_hr2day_conus.csh
sed -i 's/v532/v533/g' run_hr2day_conus.csh
sed -i 's/Bench_2016_12SE1/2016_CONUS_16x18pe/g' run_hr2day_conus.csh
sed -i 's/intel/gcc/g' run_hr2day_conus.csh
sed -i 's/2016182/2015356/g' run_hr2day_conus.csh
sed -i 's/2016195/2015357/g' run_hr2day_conus.csh
setenv CMAQ_DATA /fsx/data
./run_hr2day_conus.csh

cd $DIR/POST/bldoverlay/scripts
sed -i 's/v532/v533/g' bldit_bldoverlay.csh

./bldit_bldoverlay.csh gcc |& tee ./bldit_bldoverlay.gcc.log

cp run_bldoverlay.csh run_bldoverlay_conus.csh
sed -i 's/v532/v533/g' run_bldoverlay_conus.csh
sed -i 's/Bench_2016_12SE1/2016_CONUS_16x18pe/g' run_bldoverlay_conus.csh
sed -i 's/intel/gcc/g' run_bldoverlay_conus.csh
sed -i 's/2016-07-01/2015-12-22/g' run_bldoverlay_conus.csh
sed -i 's/2016-07-02/2015-12-23/g' run_bldoverlay_conus.csh
setenv CMAQ_DATA /fsx/data
./run_bldoverlay_conus.csh